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<h1>Homo sapiens (Dec 2013) human being (GRCh38/hg38) genome assembly</h1>
<p>
The files listed below are formatted for visualization in the Integrated Genome
Browser, available from <a href="https://bioviz.org">BioViz.org</a>.
</p>
<p>
Annotation (bed) and alignment (psl) files (if available) were downloaded from the UCSC Genome
Bioinformatics Table Browser. Each file is named for its corresponding table in the
UCSC Genome database. See the <a href="annots.xml">annots.xml</a> meta-data file in
this directory for details.
</p>
<p>
Files with extension .gz were compressed and indexed using bgzip and
tabix tools from <a href="https://www.htslib.org">htslib.org</a>.
</p>
<p>
The file named H_sapiens_Dec_2013.2bit contains sequence data and is from the UCSC Genome
Bioinformatics Web site. To convert a .2bit to fasta, use twoBitToFa. The file
<a href="genome.txt">genome.txt</a> lists sequences and their sizes and was made from 
H_sapiens_Dec_2013.2bit sequence file using twoBitInfo.
</p>
<p>
Both twoBitInfo and twoBitToFa are
available from <a href="http://hgdownload.cse.ucsc.edu/admin/exe/">http://hgdownload.cse.ucsc.edu/admin/exe/</a>.
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[ICO]NameLast modifiedSizeDescription
[DIR]Parent Directory  -  
[ ]H_sapiens_Dec_2013.2bit26-Mar-2019 16:46 809MSequence data in blat 2bit format
[ ]H_sapiens_Dec_2013_all_est.psl.gz01-Jan-2021 18:50 415MPSL (alignments) blat output file
[ ]H_sapiens_Dec_2013_all_est.psl.gz.tbi01-Jan-2021 18:50 1.4MTabix index file
[ ]H_sapiens_Dec_2013_all_mrna.psl.gz01-Jan-2021 18:50 164MPSL (alignments) blat output file
[ ]H_sapiens_Dec_2013_all_mrna.psl.gz.tbi01-Jan-2021 18:50 1.6MTabix index file
[ ]H_sapiens_Dec_2013_ncbiRefSeq.bed.gz01-Jan-2021 18:50 7.0MAnnotation or junction file
[ ]H_sapiens_Dec_2013_ncbiRefSeq.bed.gz.tbi01-Jan-2021 18:50 158KTabix index file
[ ]H_sapiens_Dec_2013_ncbiRefSeqCurated.bed.gz01-Jan-2021 18:50 3.7MAnnotation or junction file
[ ]H_sapiens_Dec_2013_ncbiRefSeqCurated.bed.gz.tbi01-Jan-2021 18:50 127KTabix index file
[ ]H_sapiens_Dec_2013_refGene.bed.gz01-Jan-2021 18:50 3.9MData from UCSC refGene table
[ ]H_sapiens_Dec_2013_refGene.bed.gz.tbi01-Jan-2021 18:50 126KTabix index file
[ ]H_sapiens_Dec_2013_snp153Common.bed.gz01-Jan-2021 18:50 153MAnnotation or junction file
[ ]H_sapiens_Dec_2013_snp153Common.bed.gz.tbi01-Jan-2021 18:50 1.6MTabix index file
[DIR]UCSCTracks/11-Nov-2018 19:46 -  
[TXT]annots.xml07-Jul-2023 19:21 4.4KAnnotation and data file list
[ ]chess3.0.GRCh38.p12.bed.gz07-Jul-2023 19:21 9.4MAnnotation or junction file
[ ]chess3.0.GRCh38.p12.bed.gz.tbi07-Jul-2023 19:21 216KTabix index file
[ ]cytoBand.cyt11-Nov-2018 19:46 44KCytobands file
[TXT]genome.txt26-Mar-2019 16:46 15KChromosome lengths and assembly information
[ ]hg38-blacklist.v2.bed.gz23-Sep-2021 14:09 5.8KAnnotation or junction file
[ ]hg38-blacklist.v2.bed.gz.tbi23-Sep-2021 14:09 10KTabix index file
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