strapdown: '/styling/strapdown/v/0.2/strapdown.js'}; 
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<title>Integrated Genome Browser QuickLoad Site</title>
<body>
<h1>Welcome to IGB Quickload</h1>
<p>
Data available here are configured for visualization
in the <a href="https://bioviz.org">Integrated Genome Browser</a>.
</p>
<h2>About Quickload</h2>
<p>
A Quickload site is a simple system of directories, sequence files, and
annotation files formatted for visualization in Integrated Genome Browser. It's a convenient
way to share data sets with other labs and with the public. 
</p>
<h2>About this Web site</h2>
<p>
This site is a checked-out copy of this <a href="https://svn.bioviz.org/viewvc/genomes/quickload/">subversion repository</a>. 
</p>
<h2>How to replicate this Web site</h2>
<p>Set up a host with the Apache2 Web server. (It may work with other servers, too. We have never tested that.)</p>
<p>
The Quickload data require around 60 Gb or less.
</p>
<p>Install svn and check out the repository with a read-only user:</p>
<p>`svn co --username=guest co https://svn.bioviz.org/repos/genomes/quickload`</p>
<p>Place the checkedout-repository in your htdocs directory (DocumentRoot)</p>
<p>Configure your Web server to allow fancy directory listings and configurations from .htaccess files residing alongside content.</p>
<p>To support IGB 9.1.4 and lower, add `T_aestivum_Aug_2018.2bit` to directory `quickload/T_aestivum_Aug_2018`.</p> 
<h2>Test it with Integrated Genome Browser</h2>
<p>Open Integrated Genome Browser and select <B>Preferences</B> from the <B>File</B> menu. Select the <B>Data Sources</B> tab. Add your new site as a new Quickload Data Source. The folder contain the file "contents.txt" is the Quickload root directory. See examples within IGB itself.</p>
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[ICO]NameLast modifiedSizeDescription
[DIR]Parent Directory  -  
[DIR]A_gambiae_Feb_2003/11-Nov-2018 20:05 - Anopheles gambiae (Feb 2003) mosquito (anoGam1/IAGP v.MOZ2)
[DIR]A_gambiae_Oct_2006/10-Sep-2019 21:30 - Anopheles gambiae (Oct 2006) mosquito (AgamP3/anoGam3)
[DIR]A_lyrata_Apr_2011/11-Nov-2018 18:11 - Arabidopsis lyrata JGI v1.0 assembly
[DIR]A_melanoleuca_Dec_2009/11-Nov-2018 18:52 - Ailuropoda melanoleuca (Dec 2009) giant panda (ailMel1/BGI-Shenzhen AilMel 1.0)
[DIR]A_mellifera_Jan_2005/11-Nov-2018 18:33 - Apis mellifera (honeybee) Jan 2005 (apiMel2/Baylor College of Medicine HGSC v.Amel_2.0 )
[DIR]A_rostrata_Oct_2016/10-Sep-2019 21:30 - Anguilla rostrata
[DIR]A_thaliana_Apr_2008/10-Sep-2019 21:29 - Arabidopsis thaliana TAIR8 genome assembly
[DIR]A_thaliana_Jun_2009/11-Nov-2018 18:41 - Arabidopsis thaliana TAIR9, TAIR10 genome assembly
[DIR]B_distachyon_Aug_2010/11-Nov-2018 18:11 - Brachypodium distachyon (a model grass) JGI v1.0 8x assembly
[DIR]B_taurus_Jun_2014/10-Dec-2018 20:19 - Bos taurus (Jun 2014) cow (UMD_3.1.1/bosTau8)
[DIR]B_taurus_Oct_2011/11-Nov-2018 19:21 - Bos taurus (cow) bosTau7 Oct 2011 assembly
[DIR]C_albicans_SC5314_Jun_2014/19-Mar-2019 00:10 - Candida albicans
[DIR]C_albicans_SC5314_Nov_2008/19-Mar-2019 00:10 - Candida albicans
[DIR]C_albicans_WO-1_Dec_2013/10-Sep-2019 21:30 - Candida albicans WO-1 (Dec 2013)
[DIR]C_albicans_WO-1_Jul_2010/10-Sep-2019 21:30 - Candida albicans
[DIR]C_elegans_Feb_2013/23-Sep-2021 14:09 - C. elegans Feb 2013 (WBcel235/ce11)
[DIR]C_elegans_May_2008/11-Nov-2018 19:56 - C. elegans May 2008 WS190/ce6
[DIR]C_elegans_Oct_2010/23-Sep-2021 14:09 - C. elegans Oct 2010 (WS220/ce10)
[DIR]C_papaya_Aug_2010/11-Nov-2018 18:11 - Papaya
[DIR]C_porcellus_Feb_2008/11-Nov-2018 18:11 - Cavia porcellus (Feb 2008) guinea pig (cavPor3)
[DIR]C_reinhardtii_Nov_2010/11-Nov-2018 18:07 - Chlamy (an algal genome)
[DIR]C_sabaeus_Mar_2014/19-Mar-2019 00:11 - Chlorocebus sabaeus (Mar 2014) African green monkey (Chlorocebus_sabaeus 1.1/chlSab2)
[DIR]C_sativa_CBDRx_Dec_2018/24-Sep-2020 04:16 - Cannabis sativa CBDRx Dec 2018
[DIR]C_sativa_DH55_Apr_2014/11-Nov-2018 19:09 - Camelina, false flax, an oilseed crop
[DIR]D_discoideum_Ax4_May_2009/11-Nov-2018 18:25 - Slime mold
[DIR]D_magna_Apr_2010/10-Sep-2019 21:29 - Daphnia magna Xinb3 v2.4 (Apr 2010) water flea
[DIR]D_magna_Jan_2019/10-Sep-2019 21:30 - Daphnia magna SK v1.0 (Jan 2019) water flea
[DIR]D_melanogaster_Apr_2006/23-Sep-2021 14:09 - Drosophila melanogaster (Apr 2006) fruit fly (dm3/BDGP R5)
[DIR]D_melanogaster_Aug_2014/23-Nov-2021 15:28 - Drosophila melanogaster (Aug 2014) fruit fly (BDGP Release 6 + ISO1 MT/dm6)
[DIR]D_melanogaster_Jul_2014/10-Sep-2019 21:30 - Drosophila melanogaster (July 2014) fruit fly (dmel_r6.03_FB2014_06)
[DIR]D_pulex_Feb_2011/10-Sep-2019 21:30 - Daphnia pulex TCO v1.0 (Feb 2011) water flea
[DIR]D_pulex_Sep_2016/10-Sep-2019 21:30 - Daphnia pulex PA42 v3.0 (Sep 2016) water flea
[DIR]D_rerio_Jul_2010/19-Mar-2019 00:10 - Danio rerio (Jul 2010) zebrafish (danRer7/Zv9)
[DIR]D_rerio_May_2017/21-Dec-2018 18:19 - Danio rerio (May 2017) zebrafish (GRCz11/danRer11)
[DIR]E_caballus_Sep_2007/11-Nov-2018 18:47 - Equus caballus (Sep 2007) horse (equCab2)
[DIR]E_coli_K12-MG1655_Jan_2012/11-Nov-2018 19:40 - Escherichia coli K12-MG1655
[DIR]F_albicollis_Jun_2013/31-Mar-2021 21:54 - Ficedula albicollis (Jun 2013) collared flycatcher (FicAlb1.5)
[DIR]F_catus_Sep_2011/11-Nov-2018 18:08 - Felis catus (Sep 2011) cat (ICGSC Felis_catus 6.2/felCat5)
[DIR]F_vesca_Sep_2011/11-Nov-2018 19:08 - Fragaria vesca (woodland strawberry) v1.1
[DIR]G_gallus_Nov_2011/11-Nov-2018 18:24 - Gallus gallus (Nov 2011) chicken (galGal4/ICGC Gallus-gallus-4.0)
[DIR]G_max_Aug_2010/11-Nov-2018 18:07 - Soybean Glyma1
[DIR]G_max_Jan_2014/11-Nov-2018 19:11 - Soybean Glyma2
[DIR]H_sapiens_Dec_2013/07-Jul-2023 19:21 - Homo sapiens hg38 (Genome Reference Consortium GRCh38)
[DIR]H_sapiens_Feb_2009/23-Sep-2021 14:09 - Homo sapiens hg19 (Genome Reference Consortium GRCh37)
[DIR]H_sapiens_Mar_2006/11-Nov-2018 18:21 - Homo sapiens hg18 (Genome Reference Consortium GRCh36)
[DIR]H_sapiens_May_2004/11-Nov-2018 20:18 - Homo sapiens hg17 (Genome Reference Consortium GRCh35)
[DIR]L_africana_Jul_2009/11-Nov-2018 19:34 - Loxodonta africana (Jul 2009) elephant (loxAfr3)
[DIR]L_passim_Apr_2014/09-Mar-2021 18:48 - Lotmaria passim, strain SF, Crithidia mellificae strain SF, whole genome shotgun sequencing project
[DIR]M_acuminata_DH_Pahang_Jan_2016/11-Nov-2018 19:35 - Musa acuminata DH Pahang (Jan 2016) banana (v2)
[DIR]M_domestica_Borkh_Jun_2017/11-Nov-2018 19:24 - Malus domestica (Jun 2017) apple
[DIR]M_musculus_Aug_2005/11-Nov-2018 18:09 - Mus musculus (Aug 2005) mouse (NCBI35/mm7)
[DIR]M_musculus_Dec_2011/23-Sep-2021 14:09 - Mus musculus (Dec 2011) mouse (GRCm38/mm10)
[DIR]M_musculus_Feb_2006/11-Nov-2018 19:07 - Mus musculus (Feb 2006) mouse (NCBI36/mm8)
[DIR]M_musculus_Jul_2007/11-Nov-2018 18:15 - Mus musculus (Jul 2007) mouse (NCBI37/mm9)
[DIR]M_musculus_Jun_2020/07-Jul-2023 19:21 - Mus musculus (Jun 2020) mouse (GRCm39/mm39)
[DIR]M_truncatula_Mar_2009/11-Nov-2018 18:41 - Medicago truncatula
[DIR]N_vectensis_Jun_2007/11-Nov-2018 19:34 - Nematostella vectensis, starlet sea anemone
[DIR]O_aries_Feb_2010/11-Nov-2018 19:27 - Ovis aries (Feb 2010) sheep (ISGC Ovis_aries_1/oviAri1)
[DIR]O_sativa_japonica_Jun_2009/11-Nov-2018 19:24 - Rice, japonic variety
[DIR]O_sativa_japonica_Oct_2011/11-Nov-2018 20:12 - Rice, japonic variety Os-Nipponbare-Reference-IRGSP-1.0 assembly
[DIR]P_patens_Jan_2008/11-Nov-2018 19:36 - Physcomitrella patens (moss)
[DIR]P_patens_Jan_2018/09-Mar-2021 18:48 - Physcomitrella patens (moss) v3.3
[DIR]P_persica_Apr_2010/11-Nov-2018 18:11 - Peach v1 genome assembly
[DIR]P_trichocarpa_Aug_2012/11-Nov-2018 20:12 - Black cottonwood (poplar)
[DIR]P_trichocarpa_Jan_2010/11-Nov-2018 18:42 - Black cottonwood (poplar)
[DIR]P_troglodytes_Oct_2010/11-Nov-2018 18:40 - Pan troglodytes (Oct 2010) chimpanzee (CGSC 2.1.3/panTro3)
[DIR]R_communis_May_2008/11-Nov-2018 19:11 - Castor bean
[DIR]R_norvegicus_Jul_2014/11-Nov-2018 18:31 - Rattus norvegicus (Jul 2014) rat (RGSC 6.0/rn6)
[DIR]R_norvegicus_Mar_2012/10-Dec-2018 20:18 - Rattus norvegicus (Mar 2012) rat (RGSC 5.0/rn5)
[DIR]R_norvegicus_Nov_2020/07-Jul-2023 19:20 - Rattus norvegicus (Nov 2020) rat (mRatBN7.2/rn7)
[DIR]S_bicolor_Jan_2009/11-Nov-2018 18:11 - Sorghum bicolor
[DIR]S_bicolor_Jun_2013/11-Nov-2018 19:22 - Sorghum bicolor
[DIR]S_cerevisiae_Apr_2011/16-Feb-2020 05:33 - S. cerevisiae strain S288C (Apr 2011) budding yeast (sacCer3)
[DIR]S_cerevisiae_Jun_2008/11-Nov-2018 19:08 - S. cerevisiae strain S288C (Jun 2008) budding yeast (sacCer2)
[DIR]S_lycopersicum_Feb_2014/11-Nov-2018 18:25 - Solanum lycopersicum (Feb 2014) tomato (SL2.50)
[DIR]S_lycopersicum_Feb_2017/24-Sep-2020 04:16 - Solanum lycopersicum (Feb 2017) tomato (SL3.0)
[DIR]S_lycopersicum_Jun_2022/01-Mar-2023 15:32 - Solanum lycopersicum (Jun 2022) tomato (SL5.0)
[DIR]S_lycopersicum_May_2012/11-Nov-2018 18:53 - Solanum lycopersicum (May 2012) tomato (SL2.40)
[DIR]S_lycopersicum_Sep_2019/24-Sep-2020 04:16 - Solanum lycopersicum (Sep 2019) tomato (SL4.0)
[DIR]S_pombe_May_2012/11-Nov-2018 19:23 - S. pombe (May 2012) fission yeast
[DIR]S_tuberosum_DM_Jul_2011/11-Nov-2018 18:35 - Solanum tuberosum Group Phureja clone DM1-3 (potato) v4.03
[DIR]T_aestivum_Aug_2018/28-Sep-2020 21:12 - Triticum aestivum (IWGSC v1)
[DIR]T_castaneum_Mar_2008/11-Nov-2018 19:00 - Tribolium castaneum (March 2008) red flour beetle
[DIR]T_kodakaraensis_KOD1_May_2004/11-Nov-2018 19:11 - Thermococcus kodakaraensis
[DIR]T_parvula_May_2012/11-Nov-2018 18:11 - Thellungiella parvula (salt cress) v2, May 2012
[DIR]T_rubripes_Oct_2011/11-Nov-2018 19:41 - Takifugu rubripes (Oct 2011) Fugu (FUGU5/fr3)
[DIR]V_carteri_Jul_2010/11-Nov-2018 18:33 - Volvox
[DIR]V_vinifera_Mar_2010/11-Nov-2018 18:07 - Wine grape 12x assembly
[DIR]X_tropicalis_Jul_2016/16-Feb-2020 04:35 - Xenopus tropicalis JGI 9.1/xenTro9
[DIR]X_tropicalis_Nov_2009/11-Nov-2018 19:15 - Xenopus tropicalis JGI 4.2/xenTro3
[DIR]Y_lipolytica_CLIB122_Jul_2004/11-Nov-2018 18:09 - Yarrowia lipolytica CLIB122 (Jul 2004) Assembly GCA_000002525.2
[DIR]Y_lipolytica_PO1f_May_2014/11-Nov-2018 20:05 - Yarrowia lipolytica PO1f (May 2014) Assembly GCA_000590845.2
[DIR]Y_lipolytica_WSH-Z06_Mar_2014/11-Nov-2018 18:35 - Yarrowia lipolytica WSH-Z06 (Mar 2014) Assembly GCA_000613155.1
[DIR]Z_mays_B73_Mar_2010/11-Nov-2018 19:40 - Zea mays B73 RefGen_v2 assembly
[TXT]contents.txt07-Jul-2023 19:21 6.1KAvailable genome assemblies and their titles
[IMG]favicon.ico11-Nov-2018 18:10 7.1KIcon IGB displays for this data source in the Data Access tab
[TXT]species.txt24-Sep-2020 04:16 302 Taxonomic and common names for species, shown in IGB species menu
[TXT]synonyms.txt10-Sep-2019 21:30 379 IGB synonym file
Apache/2.2.34 (Amazon) Server at quickload.bioviz.org Port 80