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<h1>Mus musculus (Dec 2011) mouse (GRCm38/mm10) genome assembly</h1>
<p>
The files listed below are formatted for visualization in the Integrated Genome
Browser, available from <a href="https://bioviz.org">BioViz.org</a>.
</p>
<p>
Annotation (bed) and alignment (psl) files (if available) were downloaded from the UCSC Genome
Bioinformatics Table Browser. Each file is named for its corresponding table in the
UCSC Genome database. See the <a href="annots.xml">annots.xml</a> meta-data file in
this directory for details.
</p>
<p>
Files with extension .gz were compressed and indexed using bgzip and
tabix tools from <a href="https://www.htslib.org">htslib.org</a>.
</p>
<p>
The file named M_musculus_Dec_2011.2bit contains sequence data and is from the UCSC Genome
Bioinformatics Web site. To convert a .2bit to fasta, use twoBitToFa. The file
<a href="genome.txt">genome.txt</a> lists sequences and their sizes and was made from 
M_musculus_Dec_2011.2bit sequence file using twoBitInfo.
</p>
<p>
Both twoBitInfo and twoBitToFa are
available from <a href="http://hgdownload.cse.ucsc.edu/admin/exe/">http://hgdownload.cse.ucsc.edu/admin/exe/</a>.
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[ICO]NameLast modifiedSizeDescription
[DIR]Parent Directory  -  
[ ]M_musculus_Dec_2011.2bit11-Nov-2018 19:00 682MSequence data in blat 2bit format
[ ]M_musculus_Dec_2011_all_est.psl.gz11-Nov-2018 19:00 177MPSL (alignments) blat output file
[ ]M_musculus_Dec_2011_all_est.psl.gz.tbi11-Nov-2018 19:00 1.0MTabix index file
[ ]M_musculus_Dec_2011_all_mrna.psl.gz11-Nov-2018 19:00 14MPSL (alignments) blat output file
[ ]M_musculus_Dec_2011_all_mrna.psl.gz.tbi11-Nov-2018 19:00 485KTabix index file
[ ]M_musculus_Dec_2011_refGene.bed.gz11-Nov-2018 19:00 2.1MData from UCSC refGene table
[ ]M_musculus_Dec_2011_refGene.bed.gz.tbi11-Nov-2018 19:00 195KTabix index file
[TXT]annots.xml23-Sep-2021 14:09 1.4KAnnotation and data file list
[TXT]genome.txt11-Nov-2018 19:00 1.4KChromosome lengths and assembly information
[ ]mm10-blacklist.v2.bed.gz23-Sep-2021 14:09 30KAnnotation or junction file
[ ]mm10-blacklist.v2.bed.gz.tbi23-Sep-2021 14:09 35KTabix index file
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