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<h1>Mus musculus (Jun 2020) mouse (GRCm39/mm39) genome assembly</h1>
<p>
The files listed below are formatted for visualization in the Integrated Genome
Browser, available from <a href="https://bioviz.org">BioViz.org</a>.
</p>
<p>
Annotation (bed) and alignment (psl) files (if available) were downloaded from the UCSC Genome
Bioinformatics Table Browser. Each file is named for its corresponding table in the
UCSC Genome database. See the <a href="annots.xml">annots.xml</a> meta-data file in
this directory for details.
</p>
<p>
Files with extension .gz were compressed and indexed using bgzip and
tabix tools from <a href="https://www.htslib.org">htslib.org</a>.
</p>
<p>
The file named M_musculus_Jun_2020.2bit contains sequence data and is from the UCSC Genome
Bioinformatics Web site. To convert a .2bit to fasta, use twoBitToFa. The file
<a href="genome.txt">genome.txt</a> lists sequences and their sizes and was made from 
M_musculus_Dec_2011.2bit sequence file using twoBitInfo.
</p>
<p>
Both twoBitInfo and twoBitToFa are
available from <a href="http://hgdownload.cse.ucsc.edu/admin/exe/">http://hgdownload.cse.ucsc.edu/admin/exe/</a>.
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[ICO]NameLast modifiedSizeDescription
[DIR]Parent Directory  -  
[ ]M_musculus_Jun_2020.2bit07-Jul-2023 19:21 681MSequence data in blat 2bit format
[ ]M_musculus_Jun_2020_all_est.psl.gz07-Jul-2023 19:21 204MPSL (alignments) blat output file
[ ]M_musculus_Jun_2020_all_est.psl.gz.tbi07-Jul-2023 19:21 1.0MTabix index file
[ ]M_musculus_Jun_2020_all_mrna.psl.gz07-Jul-2023 19:21 41MPSL (alignments) blat output file
[ ]M_musculus_Jun_2020_all_mrna.psl.gz.tbi07-Jul-2023 19:21 1.1MTabix index file
[ ]M_musculus_Jun_2020_ncbiRefSeq.bed.gz07-Jul-2023 19:21 5.8MAnnotation or junction file
[ ]M_musculus_Jun_2020_ncbiRefSeq.bed.gz.tbi07-Jul-2023 19:21 142KTabix index file
[ ]M_musculus_Jun_2020_refGene.bed.gz07-Jul-2023 19:21 2.6MData from UCSC refGene table
[ ]M_musculus_Jun_2020_refGene.bed.gz.tbi07-Jul-2023 19:21 104KTabix index file
[TXT]annots.xml07-Jul-2023 19:21 1.5KAnnotation and data file list
[TXT]genome.txt07-Jul-2023 19:21 1.4KChromosome lengths and assembly information
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