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<html> <body> <h1>Rattus norvegicus (Mar 2012) rat (RGSC 5.0/rn5) genome assembly</h1> <p> The files listed below are formatted for visualization in the Integrated Genome Browser, available from <a href="https://bioviz.org">BioViz.org</a>. </p> <p> Annotation (bed) and alignment (psl) files (if available) were downloaded from the UCSC Genome Bioinformatics Table Browser. Each file is named for its corresponding table in the UCSC Genome database. See the <a href="annots.xml">annots.xml</a> meta-data file in this directory for details. </p> <p> Files with extension .gz were compressed and indexed using bgzip and tabix tools from <a href="https://www.htslib.org">htslib.org</a>. </p> <p> The file named R_norvegicus_Mar_2012.2bit contains sequence data and is from the UCSC Genome Bioinformatics Web site. To convert a .2bit to fasta, use twoBitToFa. The file <a href="genome.txt">genome.txt</a> lists sequences and their sizes and was made from R_norvegicus_Mar_2012.2bit sequence file using twoBitInfo. </p> <p> Both twoBitInfo and twoBitToFa are available from <a href="http://hgdownload.cse.ucsc.edu/admin/exe/">http://hgdownload.cse.ucsc.edu/admin/exe/</a>. </p> </body> </html>
| Name | Last modified | Size | Description |
|---|---|---|---|---|
| Parent Directory | - | ||
| R_norvegicus_Mar_2012.2bit | 11-Nov-2018 20:11 | 725M | Sequence data in blat 2bit format |
| R_norvegicus_Mar_2012_all_est.psl.gz | 11-Nov-2018 20:11 | 44M | PSL (alignments) blat output file |
| R_norvegicus_Mar_2012_all_est.psl.gz.tbi | 11-Nov-2018 20:11 | 740K | Tabix index file |
| R_norvegicus_Mar_2012_all_mrna.psl.gz | 11-Nov-2018 20:11 | 3.9M | PSL (alignments) blat output file |
| R_norvegicus_Mar_2012_all_mrna.psl.gz.tbi | 11-Nov-2018 20:11 | 197K | Tabix index file |
| R_norvegicus_Mar_2012_refGene.bed.gz | 11-Nov-2018 20:11 | 1.4M | Data from UCSC refGene table |
| R_norvegicus_Mar_2012_refGene.bed.gz.tbi | 11-Nov-2018 20:11 | 151K | Tabix index file |
| annots.xml | 11-Nov-2018 20:11 | 1.0K | Annotation and data file list |
| genome.txt | 11-Nov-2018 20:11 | 69K | Chromosome lengths and assembly information |