strapdown: '/styling/strapdown/v/0.2/strapdown.js'};
<html> <body> <h1>Sorghum bicolor (Jun 2013) version 2.0 genome assembly</h1> <p> The files listed below are formatted for visualization in the Integrated Genome Browser, available from <a href="http://www.bioviz.org/igb">BioViz.org</a>. </p> <p> The gene model annotation file (S_bicolor_Jun_2013.bed.gz) was made from GFF and gene information files downloaded in Nov, 2014 from Phytozome. </p> <p> The file named S_bicolor_Jun_2013.2bit contains sequence data. It was made from fasta file also downloaded from Phytozome. To convert it back to fasta, use twoBitToFa. </p> The file <a href="genome.txt">genome.txt</a> lists sequences and their sizes and was made from the 2bit sequence file using twoBitInfo. </p> <p> For more information, see <a href="http://lorainelab.org/?p=513">this post</a> at <a href="http://www.lorainelab.org">LoraineLab.org</a>. </p> <p> You can get twoBitInfo, twoBitToFa, faToTwoBit, and related programs from <a href="http://hgdownload.cse.ucsc.edu/admin/exe/">http://hgdownload.cse.ucsc.edu/admin/exe/</a>. </p> </body> </html>
Name | Last modified | Size | Description | |
---|---|---|---|---|
Parent Directory | - | |||
annots.xml | 11-Nov-2018 19:22 | 366 | Annotation and data file list | |
genome.txt | 11-Nov-2018 19:22 | 25K | Chromosome lengths and assembly information | |
S_bicolor_Jun_2013.bed.gz.tbi | 11-Nov-2018 19:22 | 187K | Tabix index file | |
S_bicolor_Jun_2013.bed.gz | 11-Nov-2018 19:22 | 1.8M | Annotation or junction file | |
S_bicolor_Jun_2013.2bit | 11-Nov-2018 19:22 | 173M | Sequence data in blat 2bit format |